| Japanese Journal of Clinical Oncology | Pages |
Introduction
Materials and Methods
 Extraction of DNA from surgical specimens and cultured cell lines
 PCR analysis and Southern blot hybridization for HPV-16 and HPV-18 DNA
 Sensitivity of PCR for amplifying HPV-16 and HPV-18 DNA
 PCR analysis for EBV DNA
Results
 Detection of HPV DNAs
 Detection of EBV DNA
Discussion
Acknowledgements
References
Absence of Human Papillomavirus-16 and -18 DNA and Epstein-Barr Virus DNA in Esophageal Squamous Cell Carcinoma
Introduction
The recent interest in human papillomavirus (HPV) and its association with cervical squamous cell carcinoma (SCC) (1-4) has prompted the investigation for its possible etiological role in cancers at other body sites. In lesions of the skin (5), oral cavity (6), tongue (7), larynx (8) and lung (9), the presence of HPV was investigated initially by DNA hybridization techniques and recently by polymerase chain reaction (PCR).
HPV infection of the esophagus was first suggested by morphologic studies showing HPV-induced cytopathic changes (10) and later by immunohistochemical techniques demonstrating the presence of HPV antigens (11,12). The presence of the HPV genome in SCC of the esophagus was demonstrated by DNA hybridization techniques and/or PCR. However, the HPV detection rates vary considerably among different authors, ranging from 0% to 49% (13-22). In Japan, Furihata et al. (13) reported that 33.8% of patients with esophageal SCC were positive for HPV DNA by in situ hybridization and Toh et al. (14) reported a prevalence of 6.7% by PCR. It is important to establish whether HPV DNA is demonstrated in Japanese esophageal carcinoma and whether this virus plays a role in the etiology of the disease. In this study we used the PCR technique to detect HPV-16 and HPV-18 DNAs with primers amplifying a portion of the E6 region. The specific HPV DNA sequences amplified by PCR were subsequently confirmed by Southern blot hybridization with the HPV-specific probes.
The Epstein-Barr virus (EBV) was first identified in 1964 in cultured Burkitt's lymphoma cells (23) and has since been implicated in a variety of benign and malignant lymphoproliferative diseases. The association of EBV with undifferentiated nasopharyngeal carcinoma has been well documented (24,25). However, it remains controversial whether the nasopharyngeal SCC are also EBV-associated. Recently, the involvement of EBV has been demonstrated in gastric adenocarcinoma of various grades of differentiation without prominent lymphoid infiltration (26, 27). Thus it is of interest to determine whether EBV is involved in carcinoma of the esophagus, which is located between the nasopharynx and stomach. In this study we investigated the presence of EBV in squamous cell carcinoma of the esophagus by PCR.
Materials and Methods
Extraction of DNA from surgical specimens and cultured cell lines
The surgically resected specimens of esophageal carcinoma were obtained from the National Cancer Center Hospital at the time of surgery, snap-frozen in liquid nitrogen immediately after resection, and stored at -80°C until DNA extraction. Human esophageal carcinoma cell lines TE1-TE6 and TE8-TE13 were kindly provided by Dr. T. Nishihira (Second Department of Surgery, Faculty of Medicine, Tohoku University). Each cell line was established from SCC and was maintained in RPMI-1640 with 7% fetal bovine serum. Human cervical cancer cell lines SKG-IIIa and HeLa were maintained in Ham's F12 medium with 10% fetal bovine serum and in Eagle's minimum essential medium with 10% calf serum respectively. SKG-IIIa cells and HeLa cells contain approximately one copy of HPV-16 DNA and 10-20 copies of HPV-18 sequence per haploid genome respectively (2).
DNA was extracted as previously described (28) from the surgical specimens and cell lines. All the DNA samples were suitable for PCR analysis, because the 170 bp (base pair) fragment of the EXP1 gene, which is a gene identified on chromosome 11q13, about 120kb apart from the HST1 gene (29), was successfully amplified (data not shown). The EXP1 primers are:P40, 5'-AGCATTTGTGCCTGAAGCTGC-3' andP9, 5'-TGAAACCTCTCATCCGCCATCACGA-3'.
PCR reaction was performed in a 50 µl volume with 400 ng of template DNAs, 1x PCR Buffer, 10 mM of each deoxynucleotide triphosphate, 0.5 µg of each primer and 2.5 units of Taq-polymerase. The conditions for PCR analyses were as follows: 94°C for 10 min (1 cycle); 94°C for 1 min, 60°C for 2 min, 72°C for 3 min (30 cycles); 72°C for 10 min (1 cycle). After amplification of PCR, 10 µl (corresponding to 1/5 volume of the reaction mixture) was subjected to gel electrophoresis on a 3.5% NuSieve 3:1 agarose gel and stained with ethidium bromide. In ethidium bromide staining, the amplified 170 bp fragments corresponding to a DNA fragment of EXP1 used as an internal control were seen in all of the surgical specimens and the cell lines (data not shown), confirming that all DNA samples were suitable for PCR analysis.
PCR analysis and Southern blot hybridization for HPV-16 and HPV-18 DNA
Oligonucleotide primers were synthesized by a 392 DNA/RNA synthesizer (Perkin Elmer Co., Connecticut) according to published sequences (30). Sequences of primers for amplification of the E6 regions of HPV-16 and HPV-18 are as follows:p16F, 5'-AAGGGCGTAACCGAAATCGGT-3';
p16R, 5'-GTTTGCAGCTCTGTGCATA-3';p18F, 5'-AAGGGAGTAACCGAAAACGGT-3';p18R, 5'-GTGTTCAGTTCCGTGCACA-3'.
p16F and p18F correspond to the E6 sense sequence of HPV-16 and HPV-18 respectively. p16R and p18R correspond to the E6 antisense sequence of HPV-16 and HPV-18 respectively.
Each PCR reaction mixture (100 µl) contained 600 ng of template DNA, 1x PCR Buffer (10 mM Tris-HCl, pH 8.3, 50 mM KCl, 1.5 mM MgCl2, 0.001% (W/V) gelatin), 10 mM of each deoxynucleotide triphosphate, 0.15 µg of each primer and 2.0 units of Taq-polymerase. The PCR-cycling reactions were performed on a Perkin-Elmer Cetus (Norwalk, CT) DNA thermal cycler. After one cycle of denaturation at 94°C for 10 min, 30 cycles of 94°C for 1 min, 55°C for 2 min and 72°C for 2 min were carried out followed by extension at 72°C for 10 min. All experiments were performed in parallel with positive controls (SKG-IIIa for HPV-16 and HeLa for HPV-18) and negative controls (HeLa for HPV-16 and SKG-IIIa for HPV-18).
After amplification of PCR, 10 µl (1/10 volume) of the reaction mixture was subjected to gel electrophoresis on a 3.5% NuSieve 3:1 agarose gel and stained with ethidium bromide. DNA was transferred to the Hybond-N (Amersham International plc, Buckinghamshire, UK) membrane filter. Hybridization was performed at 42°C for 8-12 h in a hybridization solution (50% formamide, 0.1 M PIPES-NaOH, pH 6.8, 0.65 M NaCl, 5x Denhardt's solution, 5 mM EDTA, 0.1% SDS, 10% Dextran sulfate, 100 µg/ml denatured salmon testis DNA and 32P-labeled HPV-16 or HPV-18 probe at 1*106 c.p.m./ml). After hybridization, the filters were washed and exposed at -80°C to Kodak XAR-5 film with an intensifying screen for 1 to 4 days.
Sensitivity of PCR for amplifying HPV-16 and HPV-18 DNA
To define the sensitivity of the PCR, DNA from SKG-IIIa cells or HeLa cells was serially diluted with salmon testis DNA and was subjected to PCR analysis for HPV-16 or HPV-18. After amplification by PCR, the reaction mixture was electrophoresed, blotted and hybridized with 32P-labeled HPV-16 or HPV-18 DNA as a probe .
PCR analysis for EBV DNA
Sequences of EBV primers, from published data (31) are as follows:SL1, 5'-GGACCTCAAAGAAGAGGGGG-3',SL3, 5'-GCTCCTGGTCTTCCGCCTCC-3'.
The primers amplify and detect an 80-base pair region of the EBNA1 gene. Each PCR reaction mixture (100 µl) contained 600 ng of template DNAs, 1x PCR Buffer, 10 mM of each deoxynucleotide triphosphate, 0.25 µg of each primer, 1.0 unit of Perfect Match (Stratagene, California) and 3.0 units of Taq-polymerase. The conditions for PCR analyses were as follows: 94°C for 10 min (1 cycle); 95°C for 45 sec, 60°C for 45 sec, 72°C for 60 sec (35 cycles); 72°C for 10 min (1 cycle). All experiments were performed in parallel with pDR 2 (Clontech Laboratories, Inc., California), which is the vector containing the EBV EBNA 1 sequence, as a positive control, and with a negative control in which PCR reaction was performed without a template DNA. After PCR amplification, 10 µl of the reaction mixture was subjected to gel electrophoresis on a 3.5% NuSieve 3:1 agarose gel and stained with ethidium bromide.
Results
Detection of HPV DNAs
The PCR products amplified with the two sets of primers specific for HPV-16 or HPV-18 DNAs were observed as a specific band of the expected size (140 bp) in the positive controls, SKG-IIIa for HPV-16 and HeLa for HPV-18 (Fig. 1). No band was detected in DNAs from HeLa and SKG-IIIa cells which were used as negative controls for HPV-16 and HPV-18 DNA, respectively.
References
Received April 22, 1996; accepted July 15, 1996
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